PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0228s00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 160aa    MW: 17607.1 Da    PI: 9.3591
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0228s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.82.2e-45101542160
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +  + +  + +h           +l   ++ + sn +k +++s
  Vradi0228s00170.1  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDH-----------TLS-LQQGFYSNAKKGQASS 89 
                        77899*************************************9866555544444444443...........222.2333444433333332 PP

              YABBY  94 tsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                        +s s    +++++  +p++   v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaakn 
  Vradi0228s00170.1  90 SSSSP---TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNV 154
                        22222...244455666666669********************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-5314153IPR006780YABBY protein
SuperFamilySSF470953.14E-7101151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MNHEDKLTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PNSQNQSIDH TLSLQQGFYS NAKKGQASSS SSSPTTSNES VSPKAASFVV KPPEKKHRLP  120
SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNVIIFLF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-150KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490685.11e-102PREDICTED: protein CRABS CLAW
SwissprotQ76EJ02e-65YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0L9USV91e-105A0A0L9USV9_PHAAN; Uncharacterized protein
STRINGGLYMA02G13350.22e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-57YABBY family protein